Query gene, variant, literature, and clinical trial data from NCBI, PubMed, and ClinicalTrials.gov.
npx skills add https://github.com/caoronglin/copaw-skills --skill mcp-biomcp
Please help me install this Agent Skill. Skill: MCP BioMCP Source: https://github.com/caoronglin/copaw-skills/tree/main/skills/mcp-biomcp Command: npx skills add https://github.com/caoronglin/copaw-skills --skill mcp-biomcp
This Skill streamlines complex bioinformatics tasks by integrating multiple specialized tools for gene, protein, and clinical trial analysis, eliminating the need to navigate disparate databases and interfaces.
Use the BioMCP skill to search for information about the TP53 gene.
High-intent search queries and answers about installing and using this skill.
You can search for gene information and PubMed literature in one place by querying NCBI Gene and MyGene.info simultaneously. This consolidates biomedical research papers and detailed gene data into a single interaction, eliminating the need to navigate disparate databases.
To analyze genetic variations and their clinical significance, query ClinVar and gnomAD. This approach provides variant analysis directly, allowing researchers to understand the clinical impact of specific gene mutations without switching interfaces.
Yes, you can find ongoing and completed clinical trials using a gene mutation by searching ClinicalTrials.gov data. This integrates clinical trial retrieval with genomics and molecular biology research within a single bioinformatics analysis workflow.
This bioinformatics toolkit requires no external dependencies. It provides comprehensive bioinformatics analysis by integrating robust data parsing and direct API interaction capabilities for accurate information retrieval from authoritative sources like NCBI and PubMed.
To query detailed information about a specific gene like TP53, use the integrated bioinformatics toolkit to access NCBI Gene and MyGene.info. This retrieves comprehensive gene data directly, supporting fields such as genomics and molecular biology.
Runchuan-BUQuery NCBI ClinVar for clinical significance and annotations of genetic variants.
SciMate-AIRetrieve clinical significance data for genetic variants from ClinVar.
exon-researchFetch population allele frequencies for a specified variant from gnomAD.
jackspaceParse and write FASTA, GenBank, FASTQ, and PDB files with Biopython.
