metaboigniter
CommunityTurn MS data into validated results
Authordanilomonge
Version1.0.0
Installs0
System Documentation
What problem does it solve?
It removes the manual complexity of running nf-core/metaboigniter so metabolomics researchers can process mass spectrometry data with validated parameters, reproducible outputs, and less setup risk.
Core Features & Use Cases
- End-to-End Metabolomics Processing: Handles centroiding, feature detection, adduct detection, alignment, linking, and requantification for mass spectrometry-based workflows.
- Identification Support: Can extend the workflow with MS2-driven identification using tools such as SIRIUS and MS2Query.
- Research Use Case: Process a samplesheet of mzML files to generate standardized results, QC reports, and candidate metabolite annotations for downstream analysis.
Quick Start
Ask the skill to run metaboigniter on your samplesheet with the desired Nextflow profile and any special overrides, then write the results to your chosen output directory.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: metaboigniter Download link: https://github.com/danilomonge/nf-claw/archive/main.zip#metaboigniter Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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