metabolomics-workbench-database

You can query metabolomics study metadata and compound data by sending requests to the Metabolomics Workbench REST API, which retrieves hundreds of thousands of records across compounds, studies, and analyses. Results are returned in JSON or TXT format for pipeline integration.

RefMet nomenclature provides standardized names for metabolomics data. You can retrieve RefMet standardized names programmatically by querying the dedicated refmet endpoint of the Metabolomics Workbench REST API, returning structured JSON or TXT outputs.

Yes, you can access MS and NMR metabolomics data by querying the Metabolomics Workbench REST API. It provides programmatic access to over 4,200 studies, including untargeted datasets and MS/NMR data, exportable in JSON or TXT formats.

Yes, the Metabolomics Workbench REST API supports multiple contexts including gene, protein, and moverz endpoints. This allows you to retrieve cross-referenced metabolite data, gene, and protein information, plus moverz data for automated analyses.

You can export metabolomics REST API query results by requesting JSON or TXT formats. These outputs integrate directly into automated data pipelines, allowing you to process study metadata, compound data, and RefMet nomenclature efficiently.

The best way to access untargeted metabolomics datasets in bulk is through the Metabolomics Workbench REST API. It enables programmatic retrieval of over 4,200 studies, including untargeted datasets, with outputs formatted as JSON or TXT for bulk processing.