metabolomics-workbench-database

You can retrieve metabolomics study metadata by sending requests to the /rest study context endpoints, which return experimental factors, mwTab data, and associated summaries as JSON or TXT outputs.

RefMet nomenclature is a standardized classification system for metabolites. You can retrieve it programmatically by querying the refmet context endpoints to fetch standardized names and cross-references in JSON format.

Yes, you can perform mass spectrometry searches using the moverz context within the REST API to query MS data and retrieve structured JSON or TXT results for downstream analysis pipelines.

Yes, the Metabolomics Workbench REST API supports gene and protein contexts, allowing you to retrieve associated metabolite data via dedicated endpoints with predictable JSON or TXT outputs.

The MW REST API outputs metabolite data, study metadata, and RefMet classifications in JSON or TXT formats, ensuring predictable, machine-readable results for automated workflows across all contexts.

Integrate metabolomics data retrieval by calling the /rest endpoints to fetch studies by metabolite, then download the associated JSON or TXT data outputs for seamless downstream processing and reproducible workflows.