metagenomics
CommunityEnd-to-end shotgun metagenomics analysis.
Data & Analytics#taxonomy#metagenomics#microbiome#functional-profiling#reproducible-output#amr-detection#host-depletion
Authorzongtingwei
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Shotgun metagenomics data requires an integrated workflow to decontaminate host reads, characterize taxonomic composition, infer functional pathways, and produce reproducible outputs for downstream analyses.
Core Features & Use Cases
- Taxonomic profiling with host-depletion-aware QC.
- Functional profiling and AMR follow-up for interpretation and reporting.
- Reproducible, cohort-ready output tables suitable for multi-sample comparisons.
Quick Start
Run a complete metagenomics workflow to generate per-sample taxonomic and functional profiles with decontaminated reads.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: metagenomics Download link: https://github.com/zongtingwei/Bioclaw_Skills_Hub/archive/main.zip#metagenomics Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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