metapep

What problem does it solve?

This Skill removes the guesswork from running nf-core/metapep by turning metagenomic inputs into a reproducible epitope-prediction workflow with the right release, parameters, and outputs.

Core Features & Use Cases

• Reproducible pipeline execution: Runs the pinned metapep release with validated inputs and version-aware command generation.
• Samplesheet and parameter guidance: Helps users provide the required samplesheet columns, choose supported prediction modes, and avoid invalid flags.
• Research workflow support: Useful for metagenomic studies that need peptide generation, MHC/HLA affinity prediction, and standard run provenance for later review.

Quick Start

Ask the Skill to prepare and run metapep on your samplesheet, output path, and preferred profile so it can generate a validated nfclaw command for the correct release.