mimic-patient-analysis

Query MIMIC-IV SQLite tables to generate structured patient analysis reports.

128|12|Updated May 21, 2025
One-click install
npx skills add https://github.com/zjunlp/DataMind --skill mimic-patient-analysis
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: mimic-patient-analysis
Source: https://github.com/zjunlp/DataMind/tree/main/datacope/report_task/skill/final_skill/mimic-patient-analysis
Command: npx skills add https://github.com/zjunlp/DataMind --skill mimic-patient-analysis

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes scripts (resource) components.

What problem does it solve?

This Skill streamlines comprehensive patient analysis by querying the MIMIC-IV clinical database, allowing for in-depth investigation of a patient's medical history and outcomes.

Core Features & Use Cases

  • MIMIC-IV Database Access: Direct querying of the MIMIC-IV SQLite database for detailed clinical records.
  • Data Aggregation: Combining various datasets like diagnoses, procedures, medications, and ICU stays.
  • Analysis Workflow: Step-by-step workflow to summarize and interpret the data.
  • Use Case: A healthcare provider wants to analyze the medical history of a patient with a specific condition to understand the treatment journey and outcomes.

Quick Start

Execute the 'mimic-patient-analysis' skill by providing the patient's ID and the analysis task you want to perform, e.g., 'mimic-patient-analysis patient_id analyze_diagnosis'.

Frequently Asked Questions about mimic-patient-analysis

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I analyze patient data from the MIMIC-IV clinical database?

To analyze MIMIC-IV clinical database patient data, this Skill queries SQLite tables to generate structured reports on demographics, ICU stays, diagnoses, and procedures. It requires a direct SQLite connection to the MIMIC-IV database for comprehensive data aggregation.

What is the best way to query a patient's treatment journey in MIMIC-IV?

Querying a treatment journey in MIMIC-IV involves combining diagnoses, medications, and hospital admission records. This Skill executes a step-by-step workflow to aggregate these datasets and summarize the medical history for a specific patient ID.

Can I use this to extract ICU stay records and physical measurements from hospital records?

Yes, you can extract ICU stay records and physical measurements from hospital records. The Skill aggregates comprehensive clinical data including microbiology, billing codes, and physical measurements by querying multiple related tables within the MIMIC-IV database.

Do I need a direct SQLite connection to run a MIMIC-IV patient analysis?

Yes, a direct SQLite connection to the MIMIC-IV database is required. The Skill analyzes patient data by directly querying its tables and relationships to produce detailed clinical reports on outcomes and medical history.

How do I start analyzing diagnoses and procedures for a specific patient in MIMIC-IV?

To start analyzing diagnoses and procedures, execute the Skill by providing the patient ID and the analysis task. For example, input the patient identifier and specify the diagnosis analysis to generate a structured clinical report.