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mol-paper-renderer

Render molecular graphics from XYZ, SDF, PDB, and cube files to SVG, PNG, PDF, and GIF.

52|11|Updated Mar 10, 2026
Search Tags:#automation#rendering#molecule#crystal#publication-quality#nci#xyzrender
One-click install
npx skills add https://github.com/InternScience/ChemClaw --skill mol-paper-renderer
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: mol-paper-renderer
Source: https://github.com/InternScience/ChemClaw/tree/main/skills/mol-paper-renderer
Command: npx skills add https://github.com/InternScience/ChemClaw --skill mol-paper-renderer

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes scripts (resource) and references (resource) components.

What problem does it solve?

Researchers need publication-quality molecular graphics that are customizable, reproducible, and capable of handling complex features such as MO, NCI, ESP, and crystal structures without manual, time-consuming tuning.

Core Features & Use Cases

  • Automates generation of SVG/PNG/PDF/GIF outputs from XYZ/SDF/PDB/cube inputs.
  • Supports MO, ESP, NCI, TS detection, crystal structures, and batch rendering for research papers.
  • Provides a wrapper script and batch workflow to integrate into lab pipelines.

Quick Start

Render caffeine to a publication-quality SVG with xyzrender.

Frequently Asked Questions about mol-paper-renderer

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I generate publication-quality molecular graphics from XYZ or PDB files?▼

To generate publication-quality molecular graphics from XYZ or PDB files, you can use this skill to automate rendering into SVG, PNG, PDF, or GIF formats. It orchestrates xyzrender to process inputs directly without manual tuning.

Can I visualize molecular orbitals and non-covalent interactions from cube files?▼

Yes, you can visualize molecular orbitals (MO), non-covalent interactions (NCI), and electrostatic potentials (ESP) from cube files. The skill processes these inputs to render complex spatial features ready for research papers.

What is the best way to automate batch rendering of crystal structures for research papers?▼

The best way to automate batch rendering of crystal structures is by using the skill's wrapper script and batch workflow. It integrates directly into lab pipelines to process multiple structures reproducibly with minimal dependencies.

Does this molecular rendering tool support SDF inputs and GIF outputs?▼

Yes, this molecular rendering tool supports both SDF inputs and GIF outputs. It handles XYZ, SDF, PDB, and cube files, rendering them into SVG, PNG, PDF, or GIF formats to suit various publication needs.

Why do my molecular graphics need manual tuning when rendering crystal structures?▼

Molecular graphics often need manual tuning when rendering crystal structures due to inconsistent parameter handling. This skill eliminates that by automating customizable, reproducible rendering workflows specifically designed for crystal structures.

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