mol-render
CommunityRender vivid 3D molecular scenes from SMILES/PDB.
Authorjakechen1
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Generating professional, high-quality 3D ball-and-stick renderings of molecular structures from simple inputs like SMILES strings or PDB files is often time-consuming and error-prone. This Skill automates the process, enabling researchers and educators to produce publication-ready visuals quickly.
Core Features & Use Cases
- Builds 3D renderings from SMILES strings using RDKit for conformer generation and POV-Ray for ray-traced images.
- Accepts PDB structures with options for chain/residue filtering, ligand-only rendering, and hydrogen display controls.
- Outputs high-resolution PNG images with consistent color schemes and scalable rendering parameters suitable for reports, posters, or presentations.
- Use Case: Visualize a molecule such as ethanol, caffeine, or benzene in professional slides without manual modeling.
Quick Start
Provide the SMILES string or PDB path to render a high-quality molecule image.
Dependency Matrix
Required Modules
rdkitnumpy
Components
scripts
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: mol-render Download link: https://github.com/jakechen1/echo-research-framework/archive/main.zip#mol-render Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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