molclaw-esmfold

What problem does it solve?

This Skill converts an amino-acid sequence into a predicted 3D protein structure (PDB) using the ESMFold model, removing manual setup and ensuring model confidence metrics are available for verification.

Core Features & Use Cases

• ESMFold prediction: generate predicted PDB files from single protein sequences.
• Confidence assessment: pLDDT scores are recorded in the B-factor column and guidance is provided for interpreting confidence thresholds.
• Reproducibility and download policy: requires downloading all structure outputs to the local workspace for verification and downstream analysis.
• Use Case: run an ESMFold prediction for a protein under 800 residues, check pLDDT, map residue numbering if needed, and retrieve the PDB for docking or visualization.

Quick Start

Predict the 3D structure for the provided amino-acid sequence and download the resulting PDB file to the local workspace for verification.