motif-search
CommunityIdentify DNA/RNA/protein motifs and binding sites with regex, IUPAC, PWMs, and JASPAR databases.
Education & Research#bioinformatics#sequence analysis#motif discovery#DNA/RNA motif search#PWM analysis
Authorpradyumnasagar
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill helps researchers find motifs, patterns, and binding sites in sequences for analysis, by leveraging regex, IUPAC, PWMs, and modern motif databases like JASPAR.
Core Features & Use Cases
- Pattern Detection: Locate known motifs, including transcription factor binding sites and protein recognition sites, using regex and IUPAC patterns.
- PWM Analysis: Scan sequences with PWMs from motif databases for potential binding sites, adjusting for background sequences.
- JASPAR Access: Retrieve motifs from JASPAR databases for advanced sequence analysis.
- Use Case: Quickly identify a known transcription factor binding site in a promoter sequence using JASPAR PWMs.
Quick Start
Use the motif-search skill to identify known motifs in your sequence file 'sequence.fasta'.
Dependency Matrix
Required Modules
biopythonregexpyjasparnumpymotifpyhmmer
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: motif-search Download link: https://github.com/pradyumnasagar/open-research-skills/archive/main.zip#motif-search Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
Agent Skills Search Helper
Install a tiny helper to your Agent, search and equip skill from 620,000+ vetted skills library on demand.