multi-omics-integration

What problem does it solve?

Integrates diverse ENCODE genomic datasets to build a unified view of gene regulation and chromatin dynamics.

Core Features & Use Cases

• Data Integration: Combines RNA-seq, ATAC-seq, histone modifications, TF ChIP-seq, and 3D genome data for tissue-specific regulatory landscapes.
• Analytical Frameworks: Applies chromatin state segmentation, enhancer-gene linking, and regulatory network inference.
• Use Case: A researcher studying pancreatic islet cells integrates accessible chromatin, histone marks, gene expression, and Hi-C data to elucidate cell type-specific regulatory circuits.

Quick Start

Align and analyze ENCODE datasets across multiple modalities to identify active enhancers and their target genes in your tissue of interest.