neurosurgical-book-parser

Extract structured knowledge from neurosurgical textbooks into typed knowledge graphs.

Updated Aug 23, 2026
One-click install
npx skills add https://github.com/brainbloodbarrier/seven-aneurysms --skill neurosurgical-book-parser
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: neurosurgical-book-parser
Source: https://github.com/brainbloodbarrier/seven-aneurysms/tree/main/.claude/skills/neurosurgical-book-parser
Command: npx skills add https://github.com/brainbloodbarrier/seven-aneurysms --skill neurosurgical-book-parser

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

This Skill extracts structured medical knowledge from neurosurgical and spine surgery textbooks, producing a typed knowledge graph of anatomical structures, surgical steps, clipping techniques, complications, and clinical relationships. It enables faster knowledge capture, multi-entity linking, and graph-based querying while retaining chapter and page context.

Core Features & Use Cases

  • Chapter-aware extraction: preserves page and chapter context so identical terms map to different surgical scenarios.
  • Domain-specific taxonomy: uses neurosurgical entity types (artery, aneurysm, procedure, technique, etc.) for precise modeling.
  • Knowledge-graph ready output: data suitable for Neo4j or other graph databases to enable advanced queries, reasoning, and decision support.
  • Use Case: convert the Seven Aneurysms textbook into a searchable knowledge graph for education, QA, and clinical planning.

Quick Start

Example: run the ingestion to parse MinerU output for Seven Aneurysms from mineru_output/Seven Aneurysms/auto/ and prepare data for graph loading.

Frequently Asked Questions about neurosurgical-book-parser

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I extract structured knowledge from neurosurgical textbooks into a knowledge graph?

Extracting structured knowledge from neurosurgical textbooks involves parsing PDFs or MinerU output to identify anatomical entities, surgical procedures, techniques, and complications, then mapping them into a typed knowledge graph with preserved chapter and page context for Neo4j loading.

Can I build a searchable knowledge graph from surgical textbooks like Seven Aneurysms?

Yes. This Skill converts neurosurgical and spine surgery textbooks into Neo4j-compatible knowledge graphs capturing anatomical structures, surgical steps with sequencing, clipping techniques, and clinical relationships while retaining chapter and page provenance for education and clinical decision support.

What entity types and relationships does a neurosurgical knowledge graph capture?

A neurosurgical knowledge graph uses domain-specific entity types including arteries, aneurysms, procedures, and techniques, with explicit relationship types modeling anatomical connections, surgical sequencing, complication links, and clinical outcomes extracted from textbook content.

How does chapter-aware extraction preserve surgical context in a knowledge graph?

Chapter-aware extraction retains page and chapter metadata with each extracted entity, enabling identical anatomical terms to map to different surgical scenarios and allowing graph queries filtered by textbook location and surgical context.

What input formats does the neurosurgical textbook parser accept?

The parser accepts MinerU output and PDFs of neurosurgical and spine surgery textbooks, processing the extracted text to identify domain entities and relationships suitable for graph database ingestion.

Does this Skill support batch loading into Neo4j?

Yes. The Skill produces knowledge-graph-ready output designed for batched Neo4j loading, with kaizen-based quality logging to track extraction fidelity and enable iterative refinement of the knowledge graph.