nilearn-tool
OfficialNilearn-based ROI, connectivity, and GLM tools.
AuthorCUHK-AIM-Group
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Provides a reusable base/tool skill implementing concrete Nilearn workflows to turn preprocessed BOLD data into ROI time series, functional connectivity matrices, and optional GLM outputs, enabling researchers to build neuroimaging pipelines without rewriting core routines.
Core Features & Use Cases
- ROI time series extraction from atlas/parcellation and standardization/detrending for downstream analysis
- ROI-to-ROI connectivity computation and seed-based connectivity mapping
- Optional first-/second-level GLM integration and basic model outputs
- Curated reference snippets and a wrapper CLI routed through claw-shell for deterministic, reproducible results
- Guidance on using curated snippets when implementing Nilearn-based workflows in larger experiments
Quick Start
Run the Nilearn-based tool to extract ROI timeseries and connectivity from a preprocessed BOLD image using a given atlas and output directory.
Dependency Matrix
Required Modules
nibabelnumpypandasnilearnscikit-learnscipy
Components
scripts
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: nilearn-tool Download link: https://github.com/CUHK-AIM-Group/NeuroClaw/archive/main.zip#nilearn-tool Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
Agent Skills Search Helper
Install a tiny helper to your Agent, search and equip skill from 471,000+ vetted skills library on demand.