occupancy-and-detection

Community

Occupancy modeling with imperfect detection.

Authorbaratadiego
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Fits single-season and dynamic occupancy models that account for imperfect detection in wildlife survey data. Use this skill when the user mentions occupancy estimation, detection probability, imperfect detection, detection histories, repeated visits, MacKenzie models, psi estimation, dynamic occupancy (colonization/extinction), goodness-of-fit testing (c-hat), site occupancy, or unmarked package analyses.

Core Features & Use Cases

  • Design and analyze occupancy studies with repeated surveys and covariate specification for ψ and p.
  • Produce occupancy (ψ) and detection (p) estimates, model selection results, covariate effects, and goodness-of-fit diagnostics.
  • Guidance for reporting results and planning surveys under closure assumptions.

Quick Start

Provide a detection history matrix and site covariates to run a basic occupancy analysis and obtain ψ and p estimates.

Dependency Matrix

Required Modules

numpypandas

Components

scripts

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: occupancy-and-detection
Download link: https://github.com/baratadiego/ecological-agent-skills/archive/main.zip#occupancy-and-detection

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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