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omero-integration

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Automate microscopy data via OMERO.

Education & Research#annotations#microscopy#omero#omero-py#ROIs
Authorjackspace
Version1.0.0
Installs0

System Documentation

What problem does it solve?

OMERO integration provides a programmable path to manage microscopy data, retrieve datasets, analyze pixels, and handle ROIs/annotations within an OMERO server environment.

Core Features & Use Cases

  • Connection & session management with the OMERO Python API
  • Data access: list projects, datasets, images; fetch pixel data
  • ROI/annotaion creation and management; batch processing and automation

Quick Start

Connect to an OMERO server with BlitzGateway and list available projects.

Dependency Matrix

Required Modules

None required

Components

references

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: omero-integration
Download link: https://github.com/jackspace/ClaudeSkillz/archive/main.zip#omero-integration

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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