omicverse-single-cell-rna-velocity
CommunityTrigger RNA velocity analysis with OmicVerse.
AuthorStarlitnightly
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Automates end-to-end RNA velocity analysis on velocity-ready AnnData objects using OmicVerse, enabling reproducible workflows and easy cross-backend comparisons.
Core Features & Use Cases
- Unified workflow: preprocessing, velocity estimation, and embedding via ov.single.Velo and related ov.pp helpers.
- Supports multiple velocity backends (scvelo, dynamo, latentvelo, graphvelo) and GraphVelo refinement for downstream visualization.
- Real-world use-case: compare backends on the same dataset to identify the most reliable velocity estimates and generate publishable plots.
Quick Start
Load a velocity-ready AnnData and execute the end-to-end velocity workflow through the Velo wrapper to obtain velocities and embeddings.
Dependency Matrix
Required Modules
anndataomicversematplotlibnumpy
Components
scriptsreferencesassets
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: omicverse-single-cell-rna-velocity Download link: https://github.com/Starlitnightly/omicverse-skills/archive/main.zip#omicverse-single-cell-rna-velocity Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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