paper-summarize

Summarize paper abstracts into Key Findings, Methodology, and Relevance in Obsidian and Zotero.

45|7|Updated Apr 6, 2026
One-click install
npx skills add https://github.com/WenyuChiou/research-hub --skill paper-summarize-wenyuchiou
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: paper-summarize
Source: https://github.com/WenyuChiou/research-hub/tree/main/skills/paper-summarize
Command: npx skills add https://github.com/WenyuChiou/research-hub --skill paper-summarize-wenyuchiou

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

After research-hub ingests a cluster of cited papers, per-paper notes in Obsidian and Zotero can be underdeveloped or missing. This skill fills that gap by generating concise, evidence-backed Key Findings, Methodology, and Relevance for each paper.

Core Features & Use Cases

  • Per-paper summaries: generates Key Findings, Methodology, and Relevance for every paper using the abstract as input.
  • Synchronous dual-write: updates Obsidian markdown notes and Zotero child notes atomically, with rollback if one write fails.
  • LLM-driven accuracy: uses a configurable LLM CLI to produce structured, reference-traceable summaries anchored to the abstract.
  • Cluster workflows: ideal after auto-ingest or during literature review sessions to surface paper-level insights.

Quick Start

Trigger the summarize workflow for a cluster to populate per-paper Key Findings, Methodology, and Relevance in both Obsidian and Zotero.

Frequently Asked Questions about paper-summarize

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I automatically summarize research papers into Obsidian notes?

You can automatically summarize research papers into Obsidian notes by generating per-paper Key Findings, Methodology, and Relevance from abstracts. This skill performs a transactional dual-write to update both Obsidian markdown and Zotero child notes atomically.

Can I sync paper summaries between Zotero and Obsidian without data conflicts?

Yes, you can sync paper summaries between Zotero and Obsidian without conflicts using a synchronous dual-write mechanism. It executes transactional updates with a rollback feature that automatically reverts changes if a Zotero write operation fails.

How to generate Key Findings and Methodology from a paper abstract?

To generate Key Findings and Methodology from a paper abstract, the skill uses a configurable LLM CLI to produce structured, reference-traceable summaries. It processes each paper in a cluster with a dedicated LLM call anchored directly to the abstract text.

What happens to literature summaries if a paper lacks an adequate abstract?

If a paper lacks an adequate abstract during literature summarization, the system skips the automatic generation process. It marks the incomplete entry with a 'PDF needed' marker, ensuring only properly anchored summaries are created.

Does the paper summarize workflow validate DOI and Zotero keys before processing?

Yes, the paper summarize workflow validates inputs including DOI, year, and Zotero keys before processing. This validation ensures data integrity before executing the LLM-driven summarization and the subsequent transactional dual-writes.

When do I need per-paper notes during a literature review?

You need per-paper notes during a literature review when working with a cluster of cited papers that have underdeveloped or missing metadata. This skill fills that gap by automatically surfacing evidence-backed insights for each published work.