paperconfig
CommunityValidate paperconfig.yaml for omics data.
Authorwosnat
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill streamlines the creation and validation of paperconfig.yaml files that configure the integration of omics publication data into the knowledge graph, reducing manual setup and errors during ingestion.
Core Features & Use Cases
- Generate a complete paperconfig.yaml for a new publication, including publication metadata, environmental conditions, supplementary materials, and statistical analyses.
- Validate CSV file paths, PDF references, and cross-reference integrity to ensure downstream knowledge graph generation is reliable.
- Support multi-paper workflows by reusing the same schema and validation logic across different publications and data types.
Quick Start
Run the paperconfig skill on a paper directory such as data/Prochlorococcus/papers_and_supp/<Author Year>/ to assemble a paperconfig.yaml and then validate it using the provided script.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: paperconfig Download link: https://github.com/wosnat/multiomics_biocypher_kg/archive/main.zip#paperconfig Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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