Skills
.Work. You
Rest

pathway-enrichment-compare

Community

Two-group pathway enrichment, visualized.

Data & Analytics#enrichment#scRNA-seq#pathway-enrichment#gene-set#gseapy#adata.uns#mirrored-plot
Authorchenyhvvvv
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Compares pathway/gene-set enrichment between two user-provided gene lists and visualizes the differences with a mirrored bar plot, enabling quick interpretation of distinctive biological signals.

Core Features & Use Cases

  • Compare two gene lists against a gene-set library (MSigDB Hallmark, GO, Reactome, KEGG, and more) to identify enriched terms for each group.
  • Generate a mirrored bar plot showing terms enriched in each group on opposite sides for easy comparison.
  • Store results in adata.uns (e.g., enrichment_results_groups, enrichment_params) and surface top terms for reporting.

Quick Start

Load two gene lists into adata.uns['enrichment_genes_groups'], set the species and library, and run the enrichment to produce results and a mirrored plot.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: pathway-enrichment-compare
Download link: https://github.com/chenyhvvvv/STAT-agent/archive/main.zip#pathway-enrichment-compare

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
View Source Repository

Agent Skills Search Helper

Install a tiny helper to your Agent, search and equip skill from 471,000+ vetted skills library on demand.