Fetch protein structures from the RCSB PDB API and load them for analysis.
npx skills add https://github.com/adaptyvbio/protein-design-skills --skill pdb
Please help me install this Agent Skill. Skill: pdb Source: https://github.com/adaptyvbio/protein-design-skills/tree/main/skills/pdb Command: npx skills add https://github.com/adaptyvbio/protein-design-skills --skill pdb
This Skill enables researchers to fetch and analyze protein structures from the RCSB PDB, streamlining access to structure data and metadata for downstream design workflows.
Fetch PDB 1ALU, extract chain A, and save as chain_A.pdb.
High-intent search queries and answers about installing and using this skill.
Extract specific chains from a PDB structure by providing the PDB ID and chain identifier. The skill isolates selected chains and trims structures to defined binding regions for downstream design workflows.
Retrieve structure metadata and perform basic searches through the RCSB PDB API. This allows you to identify relevant structures for binder design analysis before fetching the full PDB or mmCIF files.
Trim protein structures to binding regions by specifying the desired region after fetching the PDB file. The skill supports chain selection and region extraction to prepare structures for downstream design workflows.
Fetch a PDB structure by ID, extract the target chain, and save it locally as a PDB file. The skill supports both API access and local file workflows to streamline structure data management.
MooseGoose0701Search and retrieve PDB/mmCIF coordinate files from RCSB PDB.
junior1pFetch and analyze protein structures from RCSB PDB files.
zongtingweiDownloads PDB/mmCIF protein files and extracts chains or domains for downstream design workflows.
jaechang-hitsQuery RCSB PDB protein and nucleic structures via the rcsb-api Python SDK.
