Search and retrieve 3D macromolecular structures from the RCSB Protein Data Bank.
npx skills add https://github.com/dp-archive/archive --skill pdb-database-dp-archive
Please help me install this Agent Skill. Skill: pdb-database Source: https://github.com/dp-archive/archive/tree/main/seed_skills/pdb-database Command: npx skills add https://github.com/dp-archive/archive --skill pdb-database-dp-archive
This Skill provides access to the RCSB PDB, enabling users to find, download, and analyze 3D protein and nucleic acid structures, streamlining research in structural biology and drug discovery.
Search for all human protein structures with a resolution less than 2.0 Angstroms.
High-intent search queries and answers about installing and using this skill.
To search protein structures in the RCSB PDB, you can query by text, sequence, or structural similarity. This allows you to find specific macromolecular structures, such as human proteins resolved below 2.0 Angstroms, and retrieve their PDB IDs.
Yes, you can download coordinate files in both PDB and mmCIF formats. The Skill provides programmatic access to retrieve 3D macromolecular structures and associated metadata directly from the RCSB database for structural biology research.
The best way to retrieve structures for drug discovery is using batch operations through the rcsb-api. This facilitates searching by text or sequence similarity and downloading multiple coordinate files to streamline your research workflow.
Yes, the Skill requires the rcsb-api dependency to interact with PDB data. It leverages this Python package to provide seamless access to search functionalities and retrieve 3D macromolecular structures and metadata.
You can find human hemoglobin structures by executing a text search for the specific organism and resolution. The Skill will query the RCSB PDB and return the relevant PDB IDs and download links for your structural analysis.
robinbarvaagSearch and retrieve 3D protein and nucleic acid structures from RCSB PDB.
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