Search, download, and analyze PDB structures via REST or GraphQL.
npx skills add https://github.com/rubensliv/k-dense-ai --skill pdb-database-rubensliv
Please help me install this Agent Skill. Skill: pdb-database Source: https://github.com/rubensliv/k-dense-ai/tree/main/scientific-skills/pdb-database Command: npx skills add https://github.com/rubensliv/k-dense-ai --skill pdb-database-rubensliv
Researchers need quick access to 3D structural data, coordinates, and rich metadata from the RCSB PDB without manual, scattered searches.
Query a structure by name and download its PDB file.
High-intent search queries and answers about installing and using this skill.
You can search RCSB PDB by text, sequence, or structural similarity to retrieve 3D biostructure coordinates and metadata, eliminating the need for manual scattered searches across the database.
Yes, batch querying across multiple structures is supported, enabling you to programmatically retrieve and integrate large sets of PDB coordinates and metadata into drug discovery or protein engineering pipelines.
Yes, structure retrieval and metadata extraction are supported through both REST and GraphQL interfaces, allowing flexible integration of PDB structural data into your custom computational analysis workflows.
Searching RCSB PDB supports text, sequence, and structure-based similarity queries to pinpoint relevant biostructures, streamlining access to 3D coordinates and experimental metadata for downstream analysis.
Downloading structures in mmCIF format is necessary for large complexes exceeding PDB format limits or when richer metadata parsing is required for complex bioinformatics and drug discovery workflows.
robotlearning123Search and retrieve 3D protein and nucleic acid structures from RCSB Protein Data Bank.
SologaSearch RCSB PDB by text, sequence, or structure and download coordinates and metadata.
biomaps-infraManipulate biological sequences and parse FASTA, GenBank, PDB, and mmCIF files.
JosephWoodallSearch and fetch 3D structural data from the RCSB PDB repository.
