Search and download macromolecular structures from the RCSB Protein Data Bank.
npx skills add https://github.com/Yezez9/Research-Agent --skill pdb-database-yezez9
Please help me install this Agent Skill. Skill: pdb-database Source: https://github.com/Yezez9/Research-Agent/tree/main/scientific-skills/pdb-database Command: npx skills add https://github.com/Yezez9/Research-Agent --skill pdb-database-yezez9
This Skill provides direct access to the RCSB Protein Data Bank, enabling users to find, download, and analyze 3D structural data of biological macromolecules, streamlining research in structural biology and drug discovery.
Use the pdb-database skill to search for all human protein structures with a resolution less than 2.0 Å.
High-intent search queries and answers about installing and using this skill.
You can search the RCSB Protein Data Bank using text queries to filter macromolecular structures by specific experimental resolution thresholds, such as finding human protein structures resolved below 2.0 Angstroms.
Yes, you can download 3D structural data of biological macromolecules directly in PDB, mmCIF, and BinaryCIF coordinate formats to support structural biology analysis and drug discovery workflows.
Available similarity searches for biological macromolecules include text-based, sequence-based, and structural similarity searches, enabling researchers to find related proteins and nucleic acids within the data bank.
You can retrieve associated experimental metadata for 3D structural data directly from the RCSB PDB, accessing details such as experimental methods, resolution, and organism information for your structural biology research.
Yes, accessing and processing 3D structural biology data utilizes standard dependencies including the requests library, the rcsb-api, and Bio.PDB to programmatically search and retrieve macromolecular information.
The best way to find human protein structures for drug discovery is to perform a targeted text search filtering by organism and experimental resolution, retrieving relevant metadata and coordinate files for downstream analysis.
ovachieverAutomate biological sequence analysis with Biopython for FASTA, GenBank, and BLAST workflows.
sanand0Search and retrieve 3D macromolecular structures from the RCSB PDB database.
jackspaceRetrieve 3D structural data from the RCSB PDB repository via GraphQL and REST APIs.
robotlearning123Search and retrieve 3D protein and nucleic acid structures from RCSB Protein Data Bank.
