pdf-explore

Extract and cross-check methods, figures, tables, and citations across scientific PDFs.

Updated Sep 11, 2026
One-click install
npx skills add https://github.com/cameronbracken/waterology-research --skill pdf-explore-cameronbracken
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: pdf-explore
Source: https://github.com/cameronbracken/waterology-research/tree/main/skills/pdf-explore
Command: npx skills add https://github.com/cameronbracken/waterology-research --skill pdf-explore-cameronbracken

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve? Answering questions about scientific papers often requires combining information scattered across methods sections, figures, tables, supplements, and cited references, which is error-prone when done from a single visible page. ## Core Features & Use Cases - Structured PDF Parsing: Maps a paper's structure (title, abstract, methods, figures, tables, supplements, citations) using pdftotext or layout-aware tools so content sits on disk for reasoning. - Provenance-Tracked Extraction: Pulls exact pages and regions supporting an answer, keeping table values, figure labels, accession IDs, and quotes tied to page numbers. - Cross-Checking Claims: Verifies conclusions against methods, captions, supplement text, and cited papers. - Use Case: When reviewing a genomics paper, extract the data accession IDs from the methods section, confirm the figure captions match the claimed results, and save cited notes with page references under notes/ or docs/. ## Quick Start Use the pdf-explore skill to extract the methods, table values, and data accessions from the attached paper and cross-check the main claims against its figures and supplement.

Frequently Asked Questions about pdf-explore

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I extract text and tables from a scientific PDF?▼

Extract text with pdftotext first so the content sits on disk, then use a layout-aware tool for tables. Keep extracted table values, figure labels, and quoted snippets tied to their page numbers for provenance.

How to cross-check claims in a research paper against its methods?▼

Map the paper's structure first, then compare each claim against the methods section, figure captions, supplement text, and cited papers. Save the supporting pages and regions as notes so every conclusion traces back to a source.

When should I use pdf-explore instead of a whole-document summary?▼

Use pdf-explore when an answer depends on more than one page or section, such as methods plus figures plus supplements. For a whole-document summary of a long PDF, use source-summarization, which reads bounded windows of on-disk text.

Can I answer a PDF question from a single visible page?▼

No, not when the question spans methods, figures, or supplements. The skill requires parsing the full structure and extracting the exact pages and regions that support the answer before reasoning.

Where are extracted PDF notes and provenance saved?▼

Extracted notes and provenance are saved as artifacts under notes/ or docs/. This keeps table values, accession IDs, and quoted snippets tied to page numbers for later verification and reuse.