Skills
.Work. You
Rest

peptide-binding

Official

Advance peptide binding predictions autonomously.

Education & Research#AlphaFold#quality gate#scientific workflow#protein engineering#docking#peptide binding#affinity scoring
Authormoleculeprotocol
Version1.0.0
Installs0

System Documentation

What problem does it solve?

It solves the problem of performing repeatable in-silico peptide binding workflows (target structure retrieval, docking, affinity scoring, and decision gates) without manual orchestration across tools.

Core Features & Use Cases

  • End-to-end peptide binding pipeline: Retrieves or predicts target/peptide structures, runs docking, and estimates affinity to support falsifiable hypotheses.
  • Tool-tier adaptability: Uses available compute tier capabilities (API-only, docking, or full physics/energy refinement) to produce the best feasible results.
  • Quality gate automation: Applies confidence (pLDDT) and affinity (estimated Kd) thresholds to decide whether to trigger a Beach.Science hypothesis post and human notification.
  • Research grounding integration: On gate pass, posts a structured hypothesis to Beach.Science (typically using the beach-science companion skill) and recommends wet-lab validation assays.

Quick Start

Run the Peptide Binding skill heartbeat so the pipeline advances one stage per tick and only notifies a human when the quality gate passes.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: peptide-binding
Download link: https://github.com/moleculeprotocol/science.beach/archive/main.zip#peptide-binding

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
View Source Repository

Agent Skills Search Helper

Install a tiny helper to your Agent, search and equip skill from 471,000+ vetted skills library on demand.