Query PrimeKG to retrieve genes, drugs, diseases, and phenotypes.
npx skills add https://github.com/yf8578/clawomics --skill primekg-yf8578
Please help me install this Agent Skill. Skill: primekg Source: https://github.com/yf8578/clawomics/tree/main/skills/primekg Command: npx skills add https://github.com/yf8578/clawomics --skill primekg-yf8578
This Skill provides programmatic access to the Precision Medicine Knowledge Graph (PrimeKG), enabling users to query and analyze complex biological data relationships for drug discovery and disease research.
Use the primekg skill to find all genes associated with Alzheimer's disease.
High-intent search queries and answers about installing and using this skill.
To query a knowledge graph for drug discovery, you can search for genes, drugs, diseases, and phenotypes to retrieve direct associations and explore multiscale biological data relationships.
Precision medicine knowledge graph data is used in network pharmacology to retrieve multiscale biological entities, enabling contextual analysis of local networks around diseases for identifying drug repurposing candidates.
Yes, you can use pandas to retrieve gene-disease associations from a CSV knowledge graph by running Python scripts that provide programmatic access to query entities and their direct neighbors.
To find drugs associated with diseases sharing common genetic pathways, perform neighbor retrieval and contextual analysis on the knowledge graph to summarize related genes, drugs, and phenotypes.
Yes, the precision medicine Skill supports entity searching for phenotypes, genes, drugs, and diseases, allowing you to retrieve direct associations and contextual network summaries for research.
Querying a CSV-based knowledge graph for bioinformatics relies on Python scripts and pandas, meaning it requires programmatic access and may lack real-time database updates or complex graph database query optimizations.
ovachieverQuery Data Commons v2 API for observations and entity resolution.
shushuznSearch biomedical entities and extract neighbor associations from the PrimeKG knowledge graph.
JosephWoodallQuery PrimeKG to search nodes, fetch neighbors, and analyze disease context.
ricableCreate and query RuVector graph databases with Cypher from Node.js.
