proteinmpnn-viz
CommunityVisualize ProteinMPNN design outputs in PyMOL.
Education & Research#visualization#sequence-design#proteinmpnn#ligandmpnn#pymol#residue-confidence#backbone-analysis
AuthorANaka
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This skill helps researchers visualize ProteinMPNN/LigandMPNN outputs in PyMOL, distinguishing designed residues from fixed ones and showing per-position confidence to streamline design validation.
Core Features & Use Cases
- Visualization of designed vs fixed residues colored by status
- Per-position confidence mapping to color scales or B-factors
- Integration with upstream/downstream tools (rfdiffusion-viz and alphafold-validation)
- Quick inspection of multiple designs on the same backbone
Quick Start
Load your ProteinMPNN output PDB into PyMOL and begin visualizing residue design status and per-position confidence.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: proteinmpnn-viz Download link: https://github.com/ANaka/claudemol/archive/main.zip#proteinmpnn-viz Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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