protocolsio-integration

Automate protocol discovery, management, and collaboration via the protocols.io API.

13|3|Updated Jun 10, 2026

Search Tags:#data management #experiment tracking #protocols.io #DOI #protocol management #scientific collaboration

Ready to run

npx skills add https://github.com/tassiovale/claude-code-kit --skill protocolsio-integration-tassiovale

💬 Prompt for ChatGPT / Claude Chat▼

Please help me install this Agent Skill.
Skill: protocolsio-integration
Source: https://github.com/tassiovale/claude-code-kit/tree/main/skills/protocolsio-integration
Command: npx skills add https://github.com/tassiovale/claude-code-kit --skill protocolsio-integration-tassiovale

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires requests, and includes scripts (resource) and references (resource) components.

What problem does it solve?

This Skill streamlines the management of scientific protocols by integrating with the protocols.io API, allowing users to perform a wide range of protocol-related tasks efficiently.

Core Features & Use Cases

Protocol Discovery: Search for existing protocols by keywords, DOI, or category.
Protocol Management: Create, update, publish, and manage scientific protocols.
Step Management: Add, edit, and organize protocol steps and procedures.
Collaborative Development: Work with team members on shared protocols.
Workspace Organization: Manage protocol repositories with role-based permissions.
Discussion & Feedback: Add or respond to protocol comments and discussions.
File Management: Upload and manage files associated with protocols.
Experiment Tracking: Document protocol executions and results.
Data Export: Back up or migrate protocol collections.
Integration Projects: Build tools that interact with protocols.io.
Use Case: A scientist wants to create a new protocol for CRISPR-Cas9 gene editing and publish it to protocols.io. They use this skill to search for existing protocols, create their own, and publish it with a DOI.

Quick Start

Use the protocolsio-integration skill to create a new protocol and publish it with a DOI.

Frequently Asked Questions about protocolsio-integration

High-intent search queries and answers about installing and using this skill.

FAQPage Schema

How do I automate protocol management and discovery using the protocols.io API?▼

You can automate protocol management by integrating with the protocols.io API to handle discovery, step management, workspace organization, and collaborative development. Valid access tokens are required for authentication to perform these operations.

Can I search for existing scientific protocols by DOI or keywords?▼

Yes, protocol discovery allows you to search for existing scientific protocols by keywords, DOI, or category. This streamlines finding relevant methodologies before creating or publishing your own experimental procedures.

Does protocol collaboration with protocols.io require specific API access tokens?▼

Yes, valid API access tokens are required for authentication. You must have protocols.io API access to manage workspaces, handle file operations, and participate in protocol discussions and collaborative development.

What is the best way to track experiment executions and manage protocol files?▼

The best way to track experiment executions is using API file operations to upload and manage associated files. This allows you to document protocol executions, manage results, and organize protocol repositories effectively.

How do I migrate or back up protocol collections from protocols.io?▼

You can migrate or back up protocol collections using data export features. This allows you to extract protocol data, manage file operations, and prepare collections for integration projects or external storage.