Calculate protein biophysical parameters and purification recommendations from amino acid sequences.
npx skills add https://github.com/farnunglab/benchaid --skill protparam
Please help me install this Agent Skill. Skill: protparam Source: https://github.com/farnunglab/benchaid/tree/main/skills/protparam Command: npx skills add https://github.com/farnunglab/benchaid --skill protparam
Calculate protein biophysical parameters and generate purification recommendations.
Provide a protein sequence to obtain biophysical parameters and purification recommendations.
High-intent search queries and answers about installing and using this skill.
You can calculate molecular weight and isoelectric point by providing an amino acid sequence to the script, which computes these biophysical parameters and outputs structured results including JSON format.
Planning a purification strategy is done by analyzing calculated biophysical parameters and detecting common tags to generate specific purification recommendations for the expressed protein.
Detecting affinity tags and protease cleavage sites is achieved by inputting the amino acid sequence into the script, which identifies these features to guide downstream processing.
Yes, you can calculate extinction coefficients via CLI usage by passing the amino acid sequence to the script, which outputs the theoretical extinction coefficient along with other properties.
Yes, the tool outputs structured results including JSON when requested, allowing you to easily parse the computed molecular weight, pI, and detected tags programmatically.
Predicting purification strategies from sequence alone is limited to theoretical biophysical calculations and tag detection, meaning it cannot account for actual folding, solubility, or expression conditions.
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