pubmed-database

Search and retrieve biomedical literature via the PubMed E-utilities REST API.

Updated Mar 10, 2026

Search Tags:#systematic review #literature search #pubmed #biomedical literature #research database #eutilities api

Ready to run

npx skills add https://github.com/felixboehm/biochem-allergy --skill pubmed-database-felixboehm

💬 Prompt for ChatGPT / Claude Chat▼

Please help me install this Agent Skill.
Skill: pubmed-database
Source: https://github.com/felixboehm/biochem-allergy/tree/main/.claude/skills/pubmed-database
Command: npx skills add https://github.com/felixboehm/biochem-allergy --skill pubmed-database-felixboehm

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes references (resource) components.

What problem does it solve?

This Skill provides direct programmatic access to the vast PubMed database, enabling users to efficiently search for and retrieve biomedical and life sciences literature.

Core Features & Use Cases

Advanced Search: Construct complex queries using Boolean operators, MeSH terms, and field tags for precise literature retrieval.
Programmatic Access: Utilize the E-utilities API for automated literature analysis, systematic reviews, and data extraction.
Use Case: A researcher needs to conduct a systematic review on the efficacy of a new drug. They can use this Skill to build a comprehensive search query, retrieve all relevant articles, and extract abstracts for initial screening.

Quick Start

Use the pubmed-database skill to search for recent systematic reviews on Alzheimer's disease treatment.

Frequently Asked Questions about pubmed-database

High-intent search queries and answers about installing and using this skill.

FAQPage Schema

How do I search biomedical literature on PubMed using Boolean operators and MeSH terms?▼

To search biomedical literature on PubMed, this Skill provides direct REST API access supporting advanced Boolean queries, MeSH terms, and field tags for precise article retrieval.

Can I use the E-utilities API for batch processing and systematic reviews?▼

Yes, the E-utilities API integration supports batch processing and automated literature analysis, enabling you to extract abstracts and manage citations for systematic reviews programmatically.

What is the best way to retrieve and manage citations for a systematic review?▼

The best way to retrieve and manage citations for a systematic review is utilizing the E-utilities API integration to build comprehensive search queries, retrieve relevant articles, and extract abstracts for screening.

Does this PubMed database integration support programmatic workflows for data extraction?▼

Yes, this PubMed database integration provides direct programmatic access tailored for automated literature analysis, data extraction, and integration into programmatic research workflows.

Are there limitations when using field tags for precise literature retrieval in biomedical searches?▼

While the Skill supports advanced field tags for precise literature retrieval, complex Boolean queries must be constructed carefully to ensure accurate biomedical search results without excluding relevant articles.