pubmed-database

Search PubMed biomedical literature and retrieve article metadata via E-utilities API.

8|Updated Jan 13, 2026

Search Tags:#research #database #api #literature search #pubmed #biomedical

Ready to run

npx skills add https://github.com/hxk622/TokenDance --skill pubmed-database-hxk622

💬 Prompt for ChatGPT / Claude Chat▼

Please help me install this Agent Skill.
Skill: pubmed-database
Source: https://github.com/hxk622/TokenDance/tree/main/backend/app/skills/builtin/scientific/database/pubmed-database
Command: npx skills add https://github.com/hxk622/TokenDance --skill pubmed-database-hxk622

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes references (resource) components.

What problem does it solve?

This Skill provides direct access to the vast PubMed database, enabling users to search for biomedical literature, retrieve article details, and automate research workflows.

Core Features & Use Cases

Advanced Search: Construct complex queries using Boolean operators, MeSH terms, and field tags to find specific research articles.
Programmatic Access: Utilize the E-utilities API for automated data retrieval, systematic reviews, and literature analysis.
Use Case: A researcher needs to find all randomized controlled trials on a new diabetes treatment published in the last two years. This Skill can construct the precise query, fetch the results, and provide abstracts for review.

Quick Start

Search PubMed for recent systematic reviews on cancer treatment.

Frequently Asked Questions about pubmed-database

High-intent search queries and answers about installing and using this skill.

FAQPage Schema

How do I search PubMed for biomedical literature using MeSH terms and Boolean operators?▼

To search PubMed for biomedical literature, construct complex queries using Boolean operators, MeSH terms, and field tags to find specific research articles and retrieve article metadata.

Can I use the E-utilities API for automated data retrieval and systematic reviews?▼

Yes, you can use the E-utilities API for automated data retrieval from the PubMed database, enabling automated research workflows and systematic literature reviews.

What is the best way to find randomized controlled trials on PubMed for a systematic review?▼

The best way to find randomized controlled trials is by constructing a precise PubMed query with advanced field tags to fetch results and provide abstracts for review.

Does this PubMed search approach support fetching article abstracts for recent systematic reviews?▼

Yes, this approach supports fetching article abstracts for recent systematic reviews by querying the PubMed database to retrieve comprehensive article details and metadata.

Are there limitations when using E-utilities API for large-scale biomedical literature extraction?▼

Limitations of using E-utilities API for large-scale biomedical literature extraction may include API rate limits and query construction constraints when retrieving vast amounts of article metadata.