skills.rest
MooseGoose0701
MooseGoose0701COMMUNITY
Explore all skills by this author →
GitHub

pubmed-database

...

1.1k|99|Updated Feb 12, 2026
Search Tags:#research#api#literature search#ncbi#pubmed#biomedical
One-click install
npx skills add https://github.com/MooseGoose0701/skill-compose --skill pubmed-database-moosegoose0701
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: pubmed-database
Source: https://github.com/MooseGoose0701/skill-compose/tree/main/skills/pubmed-database
Command: npx skills add https://github.com/MooseGoose0701/skill-compose --skill pubmed-database-moosegoose0701

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes references (resource) components.

What problem does it solve?

This Skill provides direct programmatic access to the PubMed database, enabling users to search for biomedical and life sciences literature efficiently.

Core Features & Use Cases

  • Advanced Search: Construct complex queries using Boolean operators, MeSH terms, and field tags.
  • E-utilities API: Programmatically retrieve article abstracts, summaries, and full records.
  • Use Case: Researchers can use this Skill to automate literature reviews for systematic studies, identify relevant articles on specific diseases, or track the latest publications in their field.

Quick Start

Use the pubmed-database skill to search for recent articles on 'CRISPR gene editing'.

Frequently Asked Questions about pubmed-database

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I search PubMed for biomedical literature using an API?▼

Search PubMed for biomedical literature via direct REST API access using E-utilities. This skill programmatically retrieves article abstracts, summaries, and full records by constructing complex queries with Boolean operators and MeSH terms.

Can I use Boolean operators and MeSH terms for literature search queries?▼

Yes, you can construct advanced literature search queries using Boolean operators and MeSH terms. This skill supports complex query construction to precisely filter and retrieve biomedical records from the PubMed database via the E-utilities API.

How do I automate batch processing of PubMed citations?▼

Automate batch processing of PubMed citations by utilizing the E-utilities API for programmatic data retrieval. This skill supports direct HTTP/REST interactions to fetch and process multiple biomedical article records efficiently.

Does this Skill work with Python's Bio.Entrez for biomedical literature search?▼

This skill provides direct REST API access for biomedical literature search, but identifies Python's Bio.Entrez as a preferred alternative for Python workflows. It is primarily designed for direct HTTP/REST interactions or custom API implementations.

What are the limitations of direct REST API access for systematic literature reviews?▼

Direct REST API access retrieves article abstracts and full records but does not provide full-text articles. For systematic literature reviews, you must construct advanced Boolean queries and handle batch processing of citations via HTTP/REST interactions.

Related Skills

Explore More Education & Research Skills→
jaechang-hitsjaechang-hits
298

pubmed-database

Search PubMed and retrieve article metadata via the NCBI E-utilities REST API.

Community
Advanced
musical-basicsmusical-basics

arxiv

Retrieve academic papers from arXiv via its public REST API.

Community
Intermediate
hyperbolic-chyperbolic-c
5

citation-management

Convert DOIs to BibTeX entries and validate citations for bibliographies.

Community
Advanced
sanand0sanand0
8

pubmed-database

Search PubMed biomedical literature via the E-utilities REST API.

Community
Advanced