pubmed-database

Search PubMed biomedical literature and retrieve article metadata via E-utilities API.

1|Updated Mar 12, 2026

Search Tags:#research #systematic review #literature search #pubmed #biomedical literature #eutilities api

Ready to run

npx skills add https://github.com/yf8578/clawomics --skill pubmed-database-yf8578

💬 Prompt for ChatGPT / Claude Chat▼

Please help me install this Agent Skill.
Skill: pubmed-database
Source: https://github.com/yf8578/clawomics/tree/main/skills/pubmed-database
Command: npx skills add https://github.com/yf8578/clawomics --skill pubmed-database-yf8578

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes references (resource) components.

What problem does it solve?

This Skill provides direct programmatic access to the vast PubMed database, enabling users to search for biomedical literature, retrieve article details, and build automated literature review workflows.

Core Features & Use Cases

Advanced Search: Construct complex queries using Boolean operators, MeSH terms, and field tags.
E-utilities API: Programmatically fetch article abstracts, summaries, and full records.
Use Case: Researchers can automate the process of finding all systematic reviews on a specific disease published in the last five years, saving significant manual search time.

Quick Start

Use the pubmed-database skill to find recent articles on 'CRISPR gene editing'.

Frequently Asked Questions about pubmed-database

High-intent search queries and answers about installing and using this skill.

FAQPage Schema

How do I search biomedical literature on PubMed using MeSH terms and Boolean operators?▼

You can search biomedical literature on PubMed by constructing complex queries with MeSH terms, Boolean operators, and field tags to precisely filter relevant articles. This enables advanced search strategies for systematic reviews.

Can I retrieve article abstracts and metadata in bulk from PubMed?▼

Yes, you can retrieve article abstracts, summaries, and full records in bulk from PubMed using the E-utilities API. This facilitates automated literature analysis and systematic review workflows.

What is the best way to automate a systematic review of biomedical literature?▼

Automating a systematic review of biomedical literature is best achieved by programmatically accessing the PubMed database with the E-utilities API to fetch and filter article metadata. This saves significant manual search time for researchers.

Does this PubMed search approach support filtering articles by publication date?▼

Yes, filtering articles by publication date is supported when constructing advanced queries with field tags and Boolean operators. You can find recent articles published within specific timeframes, such as the last five years.

How do I find recent articles on CRISPR gene editing through PubMed?▼

To find recent articles on CRISPR gene editing, you can use the PubMed database skill to construct a query targeting that specific topic. It supports advanced search parameters to retrieve relevant biomedical literature.

What are the limitations of using the E-utilities API for PubMed literature searches?▼

The E-utilities API for PubMed literature searches retrieves article metadata, abstracts, and summaries, but does not directly provide full-text article content. It is designed for programmatic literature retrieval and systematic review automation.