pubmed-systematic-search

Automate PubMed systematic literature searches with MeSH expansion and synonym queries.

24|8|Updated Dec 2, 2025
One-click install
npx skills add https://github.com/u9401066/pubmed-search-mcp --skill pubmed-systematic-search
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: pubmed-systematic-search
Source: https://github.com/u9401066/pubmed-search-mcp/tree/main/.claude/skills/pubmed-systematic-search
Command: npx skills add https://github.com/u9401066/pubmed-search-mcp --skill pubmed-systematic-search

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

This skill automates end-to-end systematic literature searches on PubMed using MeSH expansion and synonyms to ensure comprehensive coverage.

Core Features & Use Cases

  • Generate MeSH-informed queries with synonyms and suggested search strategies for a topic.
  • Run parallel searches across Title/Abstract, MeSH, and synonyms to maximize retrieval and then deduplicate results, highlighting highly relevant papers present across strategies.
  • Use cases include preparing literature reviews, protocol development, and evidence syntheses in biomedical research.

Quick Start

Provide a fully scoped PubMed systematic search for a topic using MeSH terms and synonyms.

Frequently Asked Questions about pubmed-systematic-search

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I build a systematic PubMed search query using MeSH terms and synonyms?

Build a systematic PubMed search by generating MeSH-informed queries expanded with synonyms, running parallel searches across Title/Abstract and MeSH fields, and then deduplicating results to highlight highly relevant papers.

What is the best way to deduplicate PubMed literature review results across multiple search strategies?

Deduplicate PubMed literature review results by running parallel searches across Title/Abstract, MeSH, and synonym strategies, then identifying overlapping records to pinpoint high-relevance papers present across multiple retrieval methods.

Can I automate evidence synthesis retrieval on PubMed without manually combining MeSH terms?

Automate evidence synthesis retrieval by using this approach to generate MeSH-expanded queries with synonyms automatically, executing parallel searches across multiple strategies, and deduplicating the output to highlight high-relevance papers.

Does systematic PubMed searching with MeSH expansion improve literature review coverage for protocol development?

Systematic PubMed searching with MeSH expansion maximizes literature review coverage for protocol development by generating comprehensive queries with synonyms and running parallel searches across multiple retrieval strategies to identify highly relevant papers.

How do I identify highly relevant papers when preparing a biomedical literature review on PubMed?

Identify highly relevant papers for biomedical literature reviews by running parallel searches across Title/Abstract, MeSH, and synonym strategies, then deduplicating results to highlight records that appear across multiple retrieval methods.

What are the limitations of automating systematic PubMed searches for evidence synthesis?

Automating systematic PubMed searches focuses on query generation, parallel retrieval, and deduplication, but requires researchers to validate MeSH term relevance and synonym accuracy to ensure comprehensive evidence synthesis coverage.