Extract pixel data and metadata from DICOM datasets using pydicom.
npx skills add https://github.com/shushuzn/Rairos --skill pydicom-shushuzn
Please help me install this Agent Skill. Skill: pydicom Source: https://github.com/shushuzn/Rairos/tree/main/skills/pydicom Command: npx skills add https://github.com/shushuzn/Rairos --skill pydicom-shushuzn
DICOM medical imaging files are difficult to work with directly, so this skill helps you safely read image data and metadata, transform images for analysis or sharing, and remove patient-identifying information.
Use the pydicom skill to anonymize the attached DICOM file 'input.dcm' into 'anonymized.dcm' with PHI removed using its bundled anonymization workflow.
High-intent search queries and answers about installing and using this skill.
To read and extract pixel data from a DICOM file, you can load the dataset and access the pixel array properties. This handles grayscale, RGB/YBR color spaces, and multi-frame images for visualization or analysis.
Anonymizing DICOM files involves replacing patient identifiers and removing common PHI-containing tags. This workflow supports safe data sharing and research use cases by writing corrected, anonymized outputs.
Converting DICOM to common image formats like PNG, JPEG, or TIFF requires reliable normalization and optional VOI windowing. This process turns single- or multi-frame DICOM slices into analysis-ready image files.
Yes, you can modify DICOM metadata by safely accessing and updating specific tags or adding new elements. This allows you to write corrected DICOM outputs tailored for downstream research pipelines.
Handling compressed DICOM requires decompressing pixel data by installing appropriate handlers for the specific transfer syntax. This ensures the dataset can be properly read regardless of compression.
Yes, this approach supports multi-frame medical imaging studies by handling pixel arrays across common photometric interpretations. It allows batch conversion of multiple frames into standard image formats.
youyinnnRead, write, and anonymize DICOM medical imaging datasets.
aurabxConvert DICOM medical images to NIfTI, PNG, JPEG, and HDF5 formats.
jackspaceRead, modify, and anonymize DICOM files via pydicom Dataset objects and metadata.
LeonChaoXRead, extract pixels from, inspect metadata of, convert, and anonymize DICOM medical images using pydicom.
