pysam-genomics
CommunityEfficiently manipulate NGS data with pysam's Python interface.
Authorpradyumnasagar
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill simplifies the manipulation of NGS data by providing a Python interface to htslib, allowing users to read, modify, filter, and write BAM/CRAM/VCF files programmatically.
Core Features & Use Cases
- NGS Data Manipulation: Read, modify, filter, and write NGS files like BAM/CRAM/VCF using pysam.
- Python Integration: Seamlessly integrate with Python logic for advanced analysis.
- Use Case: For example, users can extract variant or coverage data from a BAM file, build custom pipelines, or query regions without loading entire files.
Quick Start
Open the BAM file 'input.bam' and iterate through all alignments using pysam.
Dependency Matrix
Required Modules
pysamhtslib
Components
scripts
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: pysam-genomics Download link: https://github.com/pradyumnasagar/open-research-skills/archive/main.zip#pysam-genomics Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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