python-multimodal-10x
CommunityMultimodal single-cell analysis in Python.
Authortony-zhelonkin
Version1.0.0
Installs0
System Documentation
What problem does it solve?
End-to-end multimodal single-cell analysis for RNA and ATAC data using Python tools (MuData/muon, Scanpy, SnapATAC2) to streamline integrated workflows on 10x Multiome and CITE-seq datasets.
Core Features & Use Cases
- Integrated workflow: end-to-end RNA+ATAC processing, visualization, and cross-modality analysis.
- ATAC preprocessing & integration: TF-IDF/LSI, Harmony batch correction, differential accessibility analyses.
- Cross-platform compatibility: guidance for bridging to Seurat workflows and data exchanges between MuData and AnnData.
Quick Start
Install the required Python packages and run a minimal example to validate the multimodal pipeline.
Dependency Matrix
Required Modules
None requiredComponents
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