Query KEGG REST API for pathway entries, gene lists, and gene records.
npx skills add https://github.com/Runchuan-BU/BioClaw --skill query-kegg
Please help me install this Agent Skill. Skill: query-kegg Source: https://github.com/Runchuan-BU/BioClaw/tree/main/.claude/skills/query-kegg Command: npx skills add https://github.com/Runchuan-BU/BioClaw --skill query-kegg
Provide fast, programmatic access to KEGG pathway, gene, and compound information so users can identify pathway memberships, retrieve pathway details, and obtain gene lists without manual browsing.
Find KEGG pathways related to apoptosis in human and list the top five pathway IDs and names.
High-intent search queries and answers about installing and using this skill.
Query the KEGG REST API using the find operation with a keyword like apoptosis to retrieve matching pathway entries, returning pathway IDs and names for pathway-centric biological queries.
Retrieve pathway details and extract gene lists by using the KEGG REST API link and get endpoints with a pathway ID, returning gene records linked to that specific pathway.
Fetch KEGG gene records using the REST API get operation to convert common gene identifiers, enabling integration with downstream annotation and pathway analysis tasks.
Querying the KEGG REST API requires network access to rest.kegg.jp and uses KEGG IDs or gene names as inputs, applying to listing organism-specific pathways for human and mouse.
Limitations include the requirement for network access to rest.kegg.jp and the need to provide specific KEGG IDs or gene names as inputs for successful pathway and gene record retrieval.
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