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Rest

reactome-database

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Query Reactome pathways and analyze gene lists.

Data & Analytics#bioinformatics#enrichment#rest-api#reactome#pathway-analysis#reactome2py#gene-list
Authorovachiever
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This Skill provides programmatic access to Reactome REST APIs for retrieving pathway data, performing enrichment analyses, and mapping genes to pathways for systems biology studies.

Core Features & Use Cases

  • Content Service - Data Retrieval: get pathway info, entity details, and participation.
  • Analysis Service - Pathway Analysis: overrepresentation and expression data analyses, token management.
  • Reactome2py Package: Python client for convenient API access.
  • Helper Scripts: CLI wrapper for common operations (e.g., query, analyze, version).

Quick Start

Run the helper script to perform common operations:

  • query a pathway: python scripts/reactome_query.py query R-HSA-69278
  • run an analysis: python scripts/reactome_query.py analyze genes.txt

Dependency Matrix

Required Modules

requests

Components

scriptsreferences

💻 Claude Code Installation

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Please help me install this Skill:
Name: reactome-database
Download link: https://github.com/ovachiever/droid-tings/archive/main.zip#reactome-database

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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