reactome-database

To perform pathway enrichment analysis, submit your gene list to the Reactome Content and Analysis Services. This Skill queries the Reactome database to identify overrepresented biological pathways and reactions associated with your input genes.

Reactome pathway analysis retrieves and evaluates biological pathways, reactions, and entities to support systems biology research. It enables pathway querying, expression analysis, and species comparison to identify enriched biological mechanisms across organisms.

Yes, you can compare biological pathway data across different species using the Reactome database. This Skill supports species comparison, allowing researchers to contrast pathway reactions and entities to identify conserved or divergent biological mechanisms.

You need Python and the reactome2py library to programmatically access Reactome REST APIs. Alternatively, you can directly use Reactome's Content and Analysis Services REST APIs without the Python client, depending on your preferred environment setup.

The best way to retrieve detailed biological reaction information is by querying the Reactome database via its Content Service. This Skill facilitates pathway retrieval, allowing you to extract specific details about reactions, entities, and broader biological pathways.