Query the Reactome REST API for pathway enrichment and gene-pathway mapping.
npx skills add https://github.com/yf8578/clawomics --skill reactome-database-yf8578
Please help me install this Agent Skill. Skill: reactome-database Source: https://github.com/yf8578/clawomics/tree/main/skills/reactome-database Command: npx skills add https://github.com/yf8578/clawomics --skill reactome-database-yf8578
This Skill simplifies the process of querying and analyzing biological pathway data, enabling researchers to understand complex biological processes and gene functions.
Use the reactome-database skill to perform pathway enrichment analysis on the gene list provided in 'my_genes.txt'.
High-intent search queries and answers about installing and using this skill.
Pathway enrichment analysis identifies significantly affected biological pathways from gene lists. This Skill queries the Reactome REST API to map your differentially expressed genes and retrieve curated pathway information programmatically.
Gene-pathway mapping discovers biological pathways associated with specific genes or proteins. It supports systems biology research by providing programmatic access to curated molecular interactions and reaction data for understanding complex biological processes.
Yes, you can retrieve molecular interaction data using Python. This Skill integrates with Python workflows via the reactome2py dependency to seamlessly query the Reactome REST API for detailed pathway and reaction data.
No local database installation is required to query pathways. This Skill accesses curated pathway information remotely by querying the Reactome REST API directly, relying only on the requests and reactome2py Python dependencies.
The best way to access detailed reaction and molecular entity data is through the Reactome REST API. This Skill provides programmatic access to retrieve comprehensive pathway analysis data and molecular interactions directly into your Python environment.
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