Calculate reaction buffer recipes accounting for protein stock contributions.
npx skills add https://github.com/farnunglab/benchaid --skill reactor
Please help me install this Agent Skill. Skill: reactor Source: https://github.com/farnunglab/benchaid/tree/main/skills/reactor Command: npx skills add https://github.com/farnunglab/benchaid --skill reactor
This tool helps biochemists design and compute accurate reaction buffer recipes when protein stocks contribute components, ensuring correct final concentrations and volumes.
Run python3 scripts/reactor_cli.py --list-presets to view options and then run with a preset and a volume to generate the buffer recipe.
High-intent search queries and answers about installing and using this skill.
Yes, compensation mode calculates concentrated buffer recipes that offset the buffer components already present in your protein stocks. This ensures accurate final concentrations for your kinase assays and complex formation experiments.
Available presets cover common proteins and buffers for general protein biochemistry. You can list all preset options via the command line interface, then execute a calculation by providing a chosen preset and the desired final reaction volume.
Design a kinase assay buffer by selecting a kinase preset or specifying direct inputs for your 10 µM protein stock and 100 µL reaction volume. The tool outputs the exact component volumes needed to achieve accurate final concentrations.
Reaction buffer component lists and calculated volumes are output in either JSON or plain text format. You can generate these recipes by running the command line script with a specified preset and target volume.
No external dependencies are required to run the buffer calculation script. It operates as a standalone Python command line tool, allowing you to quickly list presets and generate buffer recipes without additional environment setup.
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