read-qc

What problem does it solve?

Sequencing data often arrive with varying quality, adapters, and contaminants that can bias downstream analyses. This skill automates QC, trimming, contamination screening, and pre-alignment cleanup to produce clean, ready-to-map reads.

Core Features & Use Cases

• Quality assessment and reporting to guide data cleaning
• Adapter trimming, quality filtering, and read cleanup before alignment
• Use Case: When processing multiple FASTQ files, generate consistent QC reports and cleaned reads for downstream pipelines

Quick Start

Provide raw FASTQ files and adapter sequences; the skill will generate QC reports, cleaned reads, and contamination summaries.