regulatory-elements
CommunityIdentify and classify regulatory elements in genomic data.
Authorammawla
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill enables users to discover, classify, and interpret genomic regulatory elements such as enhancers, promoters, silencers, and insulators, facilitating functional genome annotation.
Core Features & Use Cases
- Regulatory Element Identification: Uses ENCODE data and chromatin signatures to find active and poised regulatory regions.
- Classification by Chromatin State: Differentiates promoters, enhancers, insulators, and repressed regions based on histone marks and accessibility.
- Application: For example, identify active enhancers in liver tissue from ENCODE datasets to assist in disease research or functional annotation.
Quick Start
Search for H3K27ac and H3K4me1 experiments in your tissue to classify enhancers and linked regulatory regions.
Dependency Matrix
Required Modules
None requiredComponents
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: regulatory-elements Download link: https://github.com/ammawla/encode-toolkit/archive/main.zip#regulatory-elements Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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