report

Generate structured reports and PDFs from completed Mycelium analyses using installed convention packs.

68|2|Updated Feb 25, 2026
One-click install
npx skills add https://github.com/arjunrajlaboratory/mycelium --skill report-arjunrajlaboratory
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: report
Source: https://github.com/arjunrajlaboratory/mycelium/tree/main/skills/report
Command: npx skills add https://github.com/arjunrajlaboratory/mycelium --skill report-arjunrajlaboratory

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve? Turning finished analytical work into a shareable document is slow and inconsistent: provenance gets lost, sections are written ad hoc, and quality checks happen late or never. This Skill converts completed Mycelium analyses into structured reports, PDFs, or manuscript sections by routing to the appropriate report convention pack installed in the repository. ## Core Features & Use Cases - Convention pack routing: Reads .living/conventions/ACTIVE_CONVENTIONS.yaml and hands off to the installed report pack (e.g., report-generator), which orchestrates planning brief, memory consultation, manifest, draft, three blind sub-agent reviewers, and recompile. - Staleness detection: Compares the installed pack version against the bundled plugin version and offers to refresh before drafting. - Fallback mode: Falls back to core writing conventions and a LaTeX report template (Title / Abstract / Methods / Results / Discussion) when no convention pack is installed. - Use Case: After finishing an RNA-seq differential expression analysis registered in Mycelium, invoke this Skill to produce a publication-ready PDF with provenance tracking and a QC checklist, then log reviewer-surfaced failure modes to .living/learnings.md. ## Quick Start Use the report skill to turn my completed analysis into a structured PDF report for my collaborators.

Frequently Asked Questions about report

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I create a report from a completed Mycelium analysis?

Invoke the report skill after your analysis is registered. It reads ACTIVE_CONVENTIONS.yaml, routes to the installed report convention pack, and follows that pack's phase-based flow from planning brief through draft, blind sub-agent review, and recompile.

What happens if no report convention pack is installed?

The skill falls back to core writing conventions and a LaTeX report template with a single-document structure: Title, Abstract, Introduction, Methods, Results, Discussion, References. It suggests installing the report-generator pack for repeated report writing.

How does the skill handle outdated convention packs?

It compares the installed pack's version field against the bundled plugin copy. If the bundled version is newer, it tells you which versions differ and offers to refresh via the install_convention.py script, asking before overwriting since installed packs may carry local edits.

When should I not use the report skill?

Do not use it for running analyses, reviewing code or analysis decisions, brainstorming ideas, repository initialization, or quick conversational summaries. Those belong to the analyze, review, ideas, and core init skills respectively.

Does the report skill track provenance and quality?

Yes. The report-generator convention pack carries a provenance and style QC checklist, three template variants, section craft notes, and three blind sub-agent reviewers. After completion, the analysis manifest is updated and learnings are logged to .living/decisions.md and .living/learnings.md.