research-dataset-manager

Version and share biomedical research datasets with DVC and Hugging Face.

Updated Aug 23, 2026
One-click install
npx skills add https://github.com/hanumin/Tumi-DentAI-ResearchNexus --skill research-dataset-manager
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: research-dataset-manager
Source: https://github.com/hanumin/Tumi-DentAI-ResearchNexus/tree/main/hermes-skills/research-dataset-manager
Command: npx skills add https://github.com/hanumin/Tumi-DentAI-ResearchNexus --skill research-dataset-manager

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires huggingface_hub, gitpython, subprocess, and includes scripts (resource) and references (resource) components.

What problem does it solve?

This Skill facilitates managing large-scale biomedical research datasets by integrating version control with DVC and sharing capabilities through Hugging Face.

Core Features & Use Cases

  • Initialize and manage datasets with DVC, ensuring efficient versioning and data integrity.
  • Push datasets to remote storage, supporting cloud services like S3, GCS, or local disks for collaborative access.
  • Share datasets on Hugging Face, enabling easy access and broader dissemination among research teams.
  • Create comprehensive dataset metadata through YAML descriptions for documentation and reproducibility.
  • Example: A researcher adds new CBCT scans to their project, versions the dataset with DVC, and publishes it on Hugging Face for collaborative research.

Quick Start

To version your dataset at 'data/cbct_scans', initialize DVC, add files, commit, and push the changes ensuring management and sharing are consistent.

Frequently Asked Questions about research-dataset-manager

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I version control large biomedical research datasets?

You can version control large biomedical research datasets by initializing DVC to track data changes and pushing versions to remote storage, ensuring data integrity and reproducibility for complex medical imaging and histology files.

Can I share DVC-tracked research datasets on Hugging Face?

Yes, you can share DVC-tracked research datasets on Hugging Face by integrating the huggingface_hub library, which enables easy access and broader dissemination of your data among collaborative research teams.

What is the best way to manage medical imaging data for reproducibility?

The best way to manage medical imaging data for reproducibility is using DVC for data versioning combined with YAML metadata documentation, which tracks data integrity and supports consistent collaborative research.

Do I need Git and DVC to use this dataset versioning workflow?

Yes, you need Git and DVC installed in your environment, along with the huggingface_hub and gitpython libraries, to execute the dataset versioning, remote storage configuration, and sharing workflow.

How do I push large histology scans to remote storage for collaboration?

To push large histology scans to remote storage, configure DVC with your preferred cloud service or local disk, add the files, commit the changes, and push the dataset to ensure collaborative access.

What are the limitations of using DVC for medical research datasets?

DVC requires Git and proper remote storage configuration, meaning you must manage both Git metadata and remote storage access to handle large, complex medical research datasets effectively without exceeding local disk limits.