research-harness-audit

Audit raw data files and generate a structured data_audit_report.md.

39|46|Updated May 29, 2026
One-click install
npx skills add https://github.com/maxwell2732/claudecode-research-harness-workflow --skill research-harness-audit
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: research-harness-audit
Source: https://github.com/maxwell2732/claudecode-research-harness-workflow/tree/main/skills/research-harness-audit
Command: npx skills add https://github.com/maxwell2732/claudecode-research-harness-workflow --skill research-harness-audit

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

Ensures raw data integrity by performing a comprehensive, read-only audit that inventories files, variables, IDs, time aspects, and missingness, and outputs a structured report without modifying any data.

Core Features & Use Cases

  • Inventory each data file: size, format, encoding, rows, and columns without loading data into memory.
  • Variable inventory and missingness analysis: identify non-missing counts, missing patterns, and flag variables with high missingness.
  • ID and time checks: detect potential identifiers and time variables, their ranges, and format inconsistencies.
  • Feasibility assessment: evaluate whether the study design and data support the planned cleaning and analysis steps.
  • Output artifacts: generate reports (reports/data_audit_report.md) and audit logs (logs/audit_YYYYMMDD.log) for traceability.

Quick Start

Run the audit workflow to generate a data_audit_report.md and logs from the raw data as described in study_spec.md.

Frequently Asked Questions about research-harness-audit

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I audit raw data files for reproducibility without modifying the data?

To audit raw data files without modifying them, perform a read-only inventory of files, variables, IDs, and missingness to generate a structured data_audit_report.md and traceable logs.

What is included in a raw data audit report for research reproducibility?

A raw data audit report includes file sizes, formats, variable inventory, missingness patterns, ID ranges, time checks, and a feasibility assessment to ensure data supports planned analysis.

How do I check data quality and missingness patterns in large raw datasets?

You check data quality by scanning raw files to identify non-missing counts, detect missing patterns, and flag variables with high missingness without loading the entire dataset into memory.

Can I audit a specific raw data file instead of an entire directory?

Yes, you can target a specific raw data file using the --file argument, or apply a full-scan across all files under data/raw using the --all option to evaluate feasibility.

How are audit logs generated for research data traceability?

Audit logs are generated as logs/audit_YYYYMMDD.log files, capturing inventory details, time checks, and feasibility assessments to ensure full traceability of the raw data review.

What are the limitations of read-only data auditing for research feasibility?

Read-only data auditing evaluates whether study design and raw data support planned cleaning steps, but it cannot modify files, correct formatting inconsistencies, or resolve missing values directly.