research-intelligence

Ingest and index literature from arXiv, Semantic Scholar, OpenAlex, and Zotero.

Updated Aug 23, 2026
One-click install
npx skills add https://github.com/Cianai/ClinearHub --skill research-intelligence
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: research-intelligence
Source: https://github.com/Cianai/ClinearHub/tree/main/skills/research-intelligence
Command: npx skills add https://github.com/Cianai/ClinearHub --skill research-intelligence

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes references (resource) components.

What problem does it solve?

Research teams often drown in the volume of literature, struggle to unify findings, and lack a reproducible workflow to ingest and surface insights across sources.

Core Features & Use Cases

  • Autonomous ingestion and indexing of papers from Zotero, Semantic Scholar, OpenAlex, and arXiv into a Supabase-backed research store.
  • RAG-enabled surfaces that augment prompts with relevant findings from the research database, OpenNotebook, Obsidian vaults, and external sources.
  • End-to-end workflow orchestration from discovery, screening, and evidence extraction to presentation in Cowork or app surfaces.
  • Interactive surfaces and tooling including OpenNotebook MCPs, Claude Code sessions, and Obsidian vault sync for knowledge graphs.
  • Audit trail and provenance with prompt_versions, research_sessions, and paper_resources to track lineage.

Quick Start

Start a session by querying the system with /clinearhub:research "topic" to retrieve and ingest relevant papers.

Frequently Asked Questions about research-intelligence

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I automate ingesting papers from arXiv and Semantic Scholar into a vector store?

Automate literature ingestion by routing arXiv and Semantic Scholar queries into a Supabase-backed research store. This pipeline classifies and embeds paper resources automatically, creating a searchable vector database for your research findings.

Can I use Zotero to ingest and surface research findings for RAG workflows?

Yes, Zotero integrates directly into the ingestion pipeline to populate a Supabase vector store. You can then use RAG-enabled surfaces to augment prompts with relevant findings extracted from your synchronized Zotero library.

Does this research workflow require Supabase and edge functions to operate?

Yes, Supabase, vector embeddings, and edge functions are required to support the scope, screening, and presentation phases. These components provide the structured backend necessary to ingest, classify, and surface literature findings.

What is the best way to track provenance and audit literature research sessions?

Track provenance using built-in audit trails that record prompt_versions, research_sessions, and paper_resources. This ensures complete lineage tracking from initial discovery and screening through to final evidence extraction.

How do I sync an Obsidian vault with a research knowledge graph?

Sync an Obsidian vault using interactive surfaces and tooling designed for knowledge graph mapping. This allows RAG-augmented findings from the research database to integrate directly with your existing notes.

Can I orchestrate an end-to-end literature screening workflow from discovery to presentation?

Yes, you can orchestrate end-to-end workflows spanning discovery, screening, and evidence extraction. The pipeline surfaces ingested literature findings directly in Cowork or app interfaces for final presentation.