research-pipeline

Automate research workflows from idea generation to paper writing.

Updated Jun 7, 2026
One-click install
npx skills add https://github.com/czh-ee-2023/zotero-aris --skill research-pipeline-czh-ee-2023
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: research-pipeline
Source: https://github.com/czh-ee-2023/zotero-aris/tree/main/.claude/skills/research-pipeline
Command: npx skills add https://github.com/czh-ee-2023/zotero-aris --skill research-pipeline-czh-ee-2023

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires mcp__codex__codex, mcp__codex__codex-reply, deterministic:experiment-bridge, codex-gpt-5.5, and includes scripts (resource) and references (resource) components.

What problem does it solve?

This Skill automates the entire research lifecycle, from idea discovery to paper writing, saving researchers time and effort in managing research workflows.

Core Features & Use Cases

  • Idea Discovery: Generate and validate research ideas.
  • Experiment Bridge: Automate code implementation and deployment.
  • Auto Review Loop: Conduct automated reviews and iterate on experiments.
  • Paper Writing: Generate a narrative report and write a paper.
  • Use Case: A researcher can input a research direction and let the Skill handle the entire research process, from idea generation to final paper submission.

Quick Start

Start the research pipeline with the command: /research-pipeline "AI in medicine" -- AUTO_PROCEED: true, human checkpoint: false, difficulty: medium, code review: true, base repo: false, compact: false, auto_write: true, venue: ICLR

Frequently Asked Questions about research-pipeline

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I automate the research workflow from idea generation to paper writing?

The research pipeline automates the entire research lifecycle from idea discovery to paper writing. By inputting a research direction and configuring parameters like auto-proceed and venue, the workflow handles idea generation, experiment deployment, automated reviews, and paper writing sequentially.

Can I use this research pipeline to deploy experiments and run automated code reviews?

The research pipeline includes an experiment bridge for automating code implementation and deployment, alongside an auto review loop to conduct automated code reviews and iterate on experiments. You can enable code review and configure human checkpoints during deployment.

What AI models and dependencies do I need to run the automated research pipeline?

The research pipeline requires dependencies including codex tools and deterministic experiment bridges to function. These AI models and tools facilitate different stages of the research process, from generating ideas to writing the final paper.

Does the automated paper writing feature support formatting for specific conference venues?

Yes, the paper writing feature supports targeting specific conference venues like ICLR. You can specify the venue parameter in the start command to generate a narrative report and format the paper submission accordingly.

How do I start the research automation process using a base repository?

You can start the research automation process by executing the start command with your research direction and setting the base repo parameter. This initiates the pipeline to generate and validate research ideas based on the provided repository context.

When should I disable human checkpoints during research workflow automation?

You should disable human checkpoints by setting the parameter to false when you want the pipeline to run fully autonomously without manual intervention. This allows the automated review loop to iterate on experiments and write papers continuously without pausing for manual approval.